Accueil › Annuaire des chercheurs › D. James Nokes
D. James Nokes
Affiliation : Kenya Medical Research Institute · KEMRI-Wellcome Trust Research Programme
- 131Publications (affiliation kényane)
Profil de recherche
D. James Nokes compte 131 publications référencées (2013–2025). Ses travaux paraissent principalement dans « Wellcome Open Research », « Scientific Reports » et « PLoS ONE ». Son article le plus cité, « Global, regional, and national disease burden estimates of acute lower respiratory infections due to respiratory syncytial virus in young ch » (2017), a été cité 2382 fois. 11 de ces publications datent des trois dernières années d’activité. Ses travaux sont cosignés avec au moins 12 chercheurs, notamment dans des établissements de Royaume-Uni, États-Unis, Espagne, Brésil.
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- Characterising the asynchronous resurgence of common respiratory viruses following the COVID-19 pandemic
- Temporal changes in the positivity rate of common enteric viruses among paediatric admissions in coastal Kenya, during the COVID-19 pandemic, 2019–2022
- The cost of care for children hospitalized with respiratory syncytial virus (RSV) associated lower respiratory infection in Kenya
- Changes in the global hospitalisation burden of respiratory syncytial virus in young children during the COVID-19 pandemic: a systematic analysis
- Estimating the cost-effectiveness of maternal vaccination and monoclonal antibodies for respiratory syncytial virus in Kenya and South Africa
- Estimates of the national burden of respiratory syncytial virus in Kenyan children aged under 5 years, 2010–2018
- Genomic epidemiology of human adenovirus F40 and F41 in coastal Kenya: A retrospective hospital-based surveillance study (2013–2022)
- Genetic and potential antigenic evolution of influenza A(H1N1)pdm09 viruses circulating in Kenya during 2009–2018 influenza seasons
- Genomic epidemiology of the rotavirus G2P[4] strains in coastal Kenya pre- and post-rotavirus vaccine introduction, 2012–8
- Symptom prevalence and secondary attack rate of SARS‐CoV‐2 in rural Kenyan households: A prospective cohort study
- Assessment of gestational age at antenatal care visits among Kenyan women to inform delivery of a maternal respiratory syncytial virus (RSV) vaccine in low- and middle-income countries
- Global, regional, and national disease burden estimates of acute lower respiratory infections due to respiratory syncytial virus in children younger than 5 years in 2019: a systematic analysis
- Optimization of the SARS-CoV-2 ARTIC Network V4 Primers and Whole Genome Sequencing Protocol
- Epidemiological impact and cost-effectiveness analysis of COVID-19 vaccination in Kenya
- Transmission networks of SARS-CoV-2 in Coastal Kenya during the first two waves: A retrospective genomic study
- Identifying the research, advocacy, policy and implementation needs for the prevention and management of respiratory syncytial virus lower respiratory tract infection in low- and middle-income countries
- Revealing the extent of the first wave of the COVID-19 pandemic in Kenya based on serological and PCR-test data
- Differences in epidemiology of enteropathogens in children pre- and post-rotavirus vaccine introduction in Kilifi, coastal Kenya
- Identification of missed viruses by metagenomic sequencing of clinical respiratory samples from Kenya
- Epidemiology of COVID-19 infections on routine polymerase chain reaction (PCR) and serology testing in Coastal Kenya
- A computational framework for modelling infectious disease policy based on age and household structure with applications to the COVID-19 pandemic
- Efficiency of transplacental transfer of respiratory syncytial virus (RSV) specific antibodies among pregnant women in Kenya
- Serum immunoglobulin G and mucosal immunoglobulin A antibodies from prepandemic samples collected in Kilifi, Kenya, neutralize SARS-CoV-2 in vitro
- Drivers of respiratory syncytial virus seasonal epidemics in children under 5 years in Kilifi, coastal Kenya
- A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa
- Social contact patterns and implications for infectious disease transmission – a systematic review and meta-analysis of contact surveys
- COVID-19 transmission dynamics underlying epidemic waves in Kenya
- Global Respiratory Syncytial Virus–Related Infant Community Deaths
- Seroprevalence of Antibodies to Severe Acute Respiratory Syndrome Coronavirus 2 Among Healthcare Workers in Kenya
- Tracking the introduction and spread of SARS-CoV-2 in coastal Kenya
- Quantifying previous SARS-CoV-2 infection through mixture modelling of antibody levels
- Individual’s daily behaviour and intergenerational mixing in different social contexts of Kenya
- Revealing the extent of the first wave of the COVID-19 pandemic in Kenya based on serological and PCR-test data
- Integrating epidemiological and genetic data with different sampling intensities into a dynamic model of respiratory syncytial virus transmission
- The Etiology of Pneumonia in HIV-uninfected Children in Kilifi, Kenya
- Whole genome sequencing of two human rhinovirus A types (A101 and A15) detected in Kenya, 2016-2018
- Detection of SARS-CoV-2 variant 501Y.V2 in Comoros Islands in January 2021
- Rotavirus group A genotype circulation patterns across Kenya before and after nationwide vaccine introduction, 2010–2018
- Respiratory syncytial virus seasonality in three epidemiological zones of Kenya
- Reducing respiratory syncytial virus (RSV) hospitalization in a lower-income country by vaccinating mothers-to-be and their households
- Surveillance of endemic human coronaviruses (HCoV-NL63, OC43 and 229E) associated with childhood pneumonia in Kilifi, Kenya
- Molecular Epidemiology of Human Rhinovirus From 1-Year Surveillance Within a School Setting in Rural Coastal Kenya
- Surveillance of respiratory viruses among children attending a primary school in rural coastal Kenya
- Multiple Introductions and Predominance of Rotavirus Group A Genotype G3P[8] in Kilifi, Coastal Kenya, 4 Years after Nationwide Vaccine Introduction
- Evolution of respiratory syncytial virus genotype BA in Kilifi, Kenya, 15 years on
- Surveillance of endemic human coronaviruses (HCoV-NL63, OC43 and 229E) associated with pneumonia in Kilifi, Kenya
- Transmission and evolutionary dynamics of human coronavirus OC43 strains in coastal Kenya investigated by partial spike sequence analysis, 2015–16
- Accuracy of diagnostic tests for respiratory syncytial virus infection within a paediatric hospital population in Kilifi County, Kenya
- Effectiveness of Monovalent Rotavirus Vaccine Against Hospitalization With Acute Rotavirus Gastroenteritis in Kenyan Children
- Human metapneumovirus prevalence and patterns of subgroup persistence identified through surveillance of pediatric pneumonia hospital admissions in coastal Kenya, 2007–2016
- Airway response to respiratory syncytial virus has incidental antibacterial effects
- Impact of the Introduction of Rotavirus Vaccine on Hospital Admissions for Diarrhea Among Children in Kenya: A Controlled Interrupted Time-Series Analysis
- Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant
- Complete Genome Sequences of Dengue Virus Type 2 Strains from Kilifi, Kenya
- Human rhinovirus spatial-temporal epidemiology in rural coastal Kenya, 2015-2016, observed through outpatient surveillance
- Genome Sequences of Human Coronavirus OC43 and NL63, Associated with Respiratory Infections in Kilifi, Kenya
- Human Coronavirus NL63 Molecular Epidemiology and Evolutionary Patterns in Rural Coastal Kenya
- Surveillance of respiratory viruses in the outpatient setting in rural coastal Kenya: baseline epidemiological observations
- Model-based estimates of transmission of respiratory syncytial virus within households
- Impact of viral upper respiratory tract infection on the concentration of nasopharyngeal pneumococcal carriage among Kenyan children
- Whole genome analysis of local Kenyan and global sequences unravels the epidemiological and molecular evolutionary dynamics of RSV genotype ON1 strains
- Continuous Invasion by Respiratory Viruses Observed in Rural Households During a Respiratory Syncytial Virus Seasonal Outbreak in Coastal Kenya
- Evaluating the performance of tools used to call minority variants from whole genome short-read data
- An Intensive, Active Surveillance Reveals Continuous Invasion and High Diversity of Rhinovirus in Households
- Untargeted analysis of the airway proteomes of children with respiratory infections using mass spectrometry based proteomics
- Global, regional, and national disease burden estimates of acute lower respiratory infections due to respiratory syncytial virus in young children in 2015: a systematic review and modelling study
- Global respiratory syncytial virus-associated mortality in young children (RSV GOLD): a retrospective case series
- Mortality after Inpatient Treatment for Severe Pneumonia in Children: a Cohort Study
- Spread and Evolution of Respiratory Syncytial Virus A Genotype ON1, Coastal Kenya, 2010–2015
- Defining the vaccination window for respiratory syncytial virus (RSV) using age-seroprevalence data for children in Kilifi, Kenya
- Recent sequence variation in probe binding site affected detection of respiratory syncytial virus group B by real-time RT-PCR
- Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis
- Assessing the efficiency of catch-up campaigns for the introduction of pneumococcal conjugate vaccine: a modelling study based on data from PCV10 introduction in Kilifi, Kenya
- Quantification and determinants of the amount of respiratory syncytial virus (RSV) shed using real time PCR data from a longitudinal household study
- Quantifying social contacts in a household setting of rural Kenya using wearable proximity sensors
- Molecular Evolutionary Dynamics of Respiratory Syncytial Virus Group A in Recurrent Epidemics in Coastal Kenya
- Influenza activity in K enya, 2007–2013: timing, association with climatic factors, and implications for vaccination campaigns
- Human metapneumovirus epidemiological and evolutionary patterns in Coastal Kenya, 2007-11
- Predicting the relative impacts of maternal and neonatal respiratory syncytial virus (RSV) vaccine target product profiles: A consensus modelling approach
- Absence of Association between Cord Specific Antibody Levels and Severe Respiratory Syncytial Virus (RSV) Disease in Early Infants: A Case Control Study from Coastal Kenya
- Cohort Profile: The Kilifi Vaccine Monitoring Study
- Quantification and determinants of the amount of respiratory syncytial virus (RSV) shed using real time PCR data from a longitudinal household study
- Frequent Asymptomatic Respiratory Syncytial Virus Infections During an Epidemic in a Rural Kenyan Household Cohort
- Local Evolutionary Patterns of Human Respiratory Syncytial Virus Derived from Whole-Genome Sequencing
- Evaluating vaccination strategies for reducing infant respiratory syncytial virus infection in low-income settings
- Vaccine Induced Herd Immunity for Control of Respiratory Syncytial Virus Disease in a Low-Income Country Setting
- Successive Respiratory Syncytial Virus Epidemics in Local Populations Arise from Multiple Variant Introductions, Providing Insights into Virus Persistence
- Quantifying maternally derived respiratory syncytial virus specific neutralising antibodies in a birth cohort from coastal Kenya
- Infectious disease and health systems modelling for local decision making to control neglected tropical diseases
- Quantifying Age-Related Rates of Social Contact Using Diaries in a Rural Coastal Population of Kenya
- Influence of age, severity of infection, and co-infection on the duration of respiratory syncytial virus (RSV) shedding
- Rapid Spread and Diversification of Respiratory Syncytial Virus Genotype ON1, Kenya
- The association between age and the development of respiratory syncytial virus neutralising antibody responses following natural infection in infants
- Examining strain diversity and phylogeography in relation to an unusual epidemic pattern of respiratory syncytial virus (RSV) in a long-term refugee camp in Kenya
- Strategic priorities for respiratory syncytial virus (RSV) vaccine development
- The Source of Respiratory Syncytial Virus Infection In Infants: A Household Cohort Study In Rural Kenya
- Intestinal parasitic infections in children presenting with diarrhoea in outpatient and inpatient settings in an informal settlement of Nairobi, Kenya
- Estimation of the National Disease Burden of Influenza-Associated Severe Acute Respiratory Illness in Kenya and Guatemala: A Novel Methodology
- Kinetics of the Neutralizing Antibody Response to Respiratory Syncytial Virus Infections in a Birth Cohort
- Identification of group B respiratory syncytial viruses that lack the 60‐nucleotide duplication after six consecutive epidemics of total BA dominance at coastal K enya
Revues de publication
- Wellcome Open Research × 16
- Scientific Reports × 8
- PLoS ONE × 6
- Virus Evolution × 5
- Clinical Infectious Diseases × 5
- BMC Infectious Diseases × 5
Publications par année
- 20251
- 20242
- 20238
- 202213
- 202113
- 202011
- 20198
- 20189
- 20179
- 20168
Collaborations
Établissements partenaires : Ministry of Health · University of Oxford · Pwani University · Centers for Disease Control and Prevention · Government of Kenya
Pays des co-auteurs : Royaume-Uni · États-Unis · Espagne · Brésil
Co-auteurs
- Charles N. Agoti
- Patrick K. Munywoki
- Mwanajuma Ngama
- Nickson Murunga
- J. Anthony G. Scott
- Grieven P. Otieno
- Everlyn Kamau
- Ann Bett
- Joyce Uchi Nyiro
- Emelda A. Okiro
- Clayton O Onyango
- Charles Sande
Données bibliographiques issues d’OpenAlex (base ouverte).
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